Cecile Avery
Activity overview
Latest activity by Cecile Avery
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Cecile Avery created a post,
Merging output across multiple WDL runs?
Hello! Thanks much to the Terra support team for always being so helpful. I have a very general question, and I hope I'm not missing something obvious. I have a simple WDL that filters a file for v...
- Cecile Avery
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Cecile Avery commented,
Workspace link: https://app.terra.bio/#workspaces/VICTR_Cloud_Migration_Pilot/VICTR_BioVU_Pilot_Bastarache_Lab Submission ID: d9d3bad9-f42e-4ddd-b320-91930fb32e8a Workflow: plinkExtractVars/plinkEx...
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Cecile Avery created a post,
Completed task failing when delocalizing output...
Hello team, I have the same problem as was described here: https://support.terra.bio/hc/en-us/community/posts/14109658676891-Delocalization-of-output-failing-for-successful-alignment?input_string...
- Cecile Avery
- 2 followers
- 3 comments
- 0 votes
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Cecile Avery created a post,
(R library qs) function qread cannot locate file, even with correct path?
Hello! Hoping someone can help me with this problem. I'm trying to use the package qs, but when I supply the path to the file, qread cannot find the file. I have double checked the path to see if ...
- Cecile Avery
- 2 followers
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- 0 votes
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Cecile Avery commented,
Hi Josh, Thank you for your response! Yes, I have changed the configuration itself to use the spark cluster. The environment updates accordingly, and then when I re-run my notebook, hail does no...
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Cecile Avery created a post,
Hail does not import on Spark Cluster
Hello! Apologies if this is a low-level question. I have been using a jupyter notebook to develop a filtering script, but it's been running extremely slowly with a single spark cluster. I had been ...
- Cecile Avery
- 3 followers
- 3 comments
- 0 votes