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Allie Cliffe

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Activity overview

Latest activity by Allie Cliffe

  • Allie Cliffe created an article,

    June 20, 2025

    The following release notes correspond to the dates June 14 to June 20, 2025.This release also includes back-end updates to workflows, interactive analysis (Notebooks, Galaxy, RStudio), user interf...

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  • Allie Cliffe created an article,

    June 13, 2025

    The following release notes correspond to the dates June 7 to June 13, 2025.This release also includes back-end updates to workflows, interactive analysis (Notebooks, Galaxy, RStudio), user interfa...

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  • Allie Cliffe created an article,

    June 6, 2025

    The following release notes correspond to the dates May 31 to June 6, 2025. This release also includes back-end updates to workflows, interactive analysis (Notebooks, Galaxy, RStudio), user interfa...

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  • Allie Cliffe created an article,

    4. Ingest data into TDR

    Finally, you'll push data from the submission/staging workspace to the linked TDR dataset. If you choose, you can clean up the staging workspace. 4.1. Grant TDR permission to read data in external ...

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  • Allie Cliffe created an article,

    3. Stage/QC data in submission workspace

    Once you have prepared your omics object files and generated TSV files for each table in your data model, follow the directions below to deposit the data object files and all TSV files into the dat...

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  • Allie Cliffe created an article,

    2. Format/prepare data for TDR

    Use the data model (step 2) as an outline for generating TSVs for all the tables in your data model. Summary Before loading data into your staging workspace (step 4), you’ll organize all required ...

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  • Allie Cliffe created an article,

    1. Set up data model

    Before submitting data to TDR, you will need to set up and submit your data model, specifying what data you have, how to organize them in tables (TSVs) and and how data in tables are connected. .  ...

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  • Allie Cliffe created an article,

    May 30, 2025

    The following release notes correspond to the dates May 24 to May 30, 2025. This release also includes back-end updates to workflows, interactive analysis (Notebooks, Galaxy, RStudio), user interfa...

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  • Allie Cliffe created an article,

    May 16, 2025

    The following release notes correspond to the dates May 10 to May 16, 2025. This release also includes back-end updates to workflows, interactive analysis (Notebooks, Galaxy, RStudio), user interfa...

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  • Allie Cliffe created an article,

    May 9, 2025

    The following release notes correspond to the dates May 3 to May 9, 2025. This release also includes back-end updates to workflows, interactive analysis (Notebooks, Galaxy, RStudio), user interface...

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