
Stephanie Gogarten
Activity overview
Latest activity by Stephanie Gogarten
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Stephanie Gogarten created a post,
Size limits on data tables?
We are trying to create very large data tables in a workspace to track simulated genotype data. We are using the Bioconductor::AnVIL R functions avtable_import and avtable_import_set to write to th...
- Stephanie Gogarten
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Stephanie Gogarten created a post,
Latest 1000G VCF files on AnVIL?
Are the most recent VCF files from the high-coverage 1000 Genomes dataset available on AnVIL, or are there plans to make them available soon? The 1000 Genomes public workspace only has the much old...
- Stephanie Gogarten
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Stephanie Gogarten commented,
Is it possible to preserve the ordering in the initial TSV file (or Python/R table when interacting with data tables programmatically)? Our project will be creating hundreds of workspaces, so chang...
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Stephanie Gogarten commented,
Interesting, when I click on the file (which has a DRS identifier), I get a curl command to download instead of gsutil. So maybe this is a known limitation of gsutil for controlled access data; it ...
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Stephanie Gogarten commented,
I just tried again after several days and got the same error: gsutil -u terra-c9b4d853 cp gs://nih-nhlbi-topmed-released-phs000964-c3/phs000964.v3.pht004839.v2.p1.TOPMed_WGS_JHS_Sample.MULTI.txt.gz...
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Stephanie Gogarten commented,
I have linked my NIH account, as well as my account with NHLBI BioData Catalyst Framework Services, which is what gives me access to this particular file via its DRS and terra-notebook-utils. I jus...
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Stephanie Gogarten commented,
My account is not a user on the google billing project, so that must be the problem for the first part of this question. A subset of our team manages Google billing, and we create new workspaces un...
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Stephanie Gogarten created a post,
Error "Permission 'storage.buckets.list' denied on resource" when using gsutil
Following the instructions in the support articles here and here leads to errors with `gsutil ls`: stephanie Applications $ ./google-cloud-sdk/bin/gsutil lsAccessDeniedException: 403 sdmorris@uw.ed...
- Stephanie Gogarten
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- 9 comments
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Stephanie Gogarten commented,
I'm referring to the "Workspace Data" table with Key/Value/Description columns, which has no way to resize the columns.
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Stephanie Gogarten created a post,
Show full entries in Workspace Data table
In the Workspace Data table, if I enter longer text in the "value" or "description" fields, there seems to be no way to view the entire contents of the field via the web interface. Downloading as a...
- Stephanie Gogarten
- 2 followers
- 3 comments
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