Emil Furat

1. Community
2. General Discussion
3. Issue with accessing the external bucket for ImportGVCFs task in GATK joint-genotyping workflow

Hi Zih-Hua,   Sorry for the delay getting back to you. Can you share the workspace where you are seeing this issue with GROUP_FireCloud-Support@firecloud.org by clicking the Share button in your wo...

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• October 26, 2021 15:16
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1. Community
2. General Discussion
3. hg19 and hg38 TCGA workspaces

Hi Maha,   We have regained our TCGA access and were able to take a closer look at your workspace, we can confirm that there is not a column for BAM files anywhere in your data tables. We also noti...

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• October 25, 2021 15:51
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1. Community
2. General Discussion
3. Increasing disk size on attached persistent disk does not increase space on /home/jupyter/notebooks

Hi Sabrina,   I'm glad to hear that you were able to get your Cloud Environment updated! I did some testing and can confirm that the Cloud Environment PD does not update immediately, even after pau...

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• October 25, 2021 15:30
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1. Community
2. Featured Workspace Help
3. ExomeGermlineSingleSample fails

Hi Mat,We have made a copy of your workspace and reconfigured the data tables/workflow you are using - our hope is that we will be able to use this in order to help identify the problem. Could you ...

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• Edited October 22, 2021 18:31
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1. Community
2. General Discussion
3. hg19 and hg38 TCGA workspaces

Hi Maha,   We still have yet to be given TCGA access, let's see if we can find another solution.   Just to confirm: Are you able to find the column containing the GDC UUIDs in the original version ...

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• October 22, 2021 14:52
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1. Community
2. Featured Workspace Help
3. ExomeGermlineSingleSample fails

Hi Mat,If I'm not mistaken, the two "sample_and_unmapped_bams" attribute descriptions you have shared are the same, is it possible that you have shared the wrong version?I would recommend reviewing...

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• Edited October 21, 2021 19:44
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1. Community
2. General Discussion
3. Docker Hub login error on scattered task

Hi Aisling,   I'm glad to hear it seems to be working. Yes, it sounds like the limit you reached was only temporary.  If we can help with anything else, please let us know.   Kind regards, Emil      

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• October 21, 2021 17:24
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1. Community
2. Featured Workspace Help
3. ExomeGermlineSingleSample fails

Hi Mat,   My apologies for the misunderstanding, could you please share the URL to your workspace?   Best, Emil 

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• October 18, 2021 20:57
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1. Community
2. General Discussion
3. hg19 and hg38 TCGA workspaces

Hi Maha,   Sorry for the delay getting back to you, our support staff has lost access to TCGA protected workspaces so we are unable to troubleshoot your issue at this time. We hope to regain access...

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• October 18, 2021 19:54
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1. Community
2. Featured Workspace Help
3. ExomeGermlineSingleSample fails

Hi Mat,   Could you please share a link to your workspace?   Best, Emil

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• October 18, 2021 18:31
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