Hi Terra Crew,
I'm trying to run a workflow and it keeps failing when it tries to access a file I uploaded to a workspace I created. The file is just a list of other file locations that the workflow will use. Every file in that list was manually uploaded into the workspace as well and I can access all of them. When I run the specific workflow that needs to read in these files, I'm receiving a PAPI error code 9 when it tries to access this file.
2022/02/28 17:55:17 Localizing input gs://fc-08250b31-6e35-47ef-baee-31d9c4edf973/star_genome_list/chrNameLength.txt -> /cromwell_root/fc-08250b31-6e35-47ef-baee-31d9c4edf973/star_genome_list/chrNameLength.txt Error attempting to localize file with command: 'mkdir -p '/cromwell_root/fc-08250b31-6e35-47ef-baee-31d9c4edf973/star_genome_list/' && rm -f /root/.config/gcloud/gce && gsutil -o 'GSUtil:parallel_thread_count=1' -o 'GSUtil:sliced_object_download_max_components=8' cp 'gs://fc-08250b31-6e35-47ef-baee-31d9c4edf973/star_genome_list/chrNameLength.txt ' '/cromwell_root/fc-08250b31-6e35-47ef-baee-31d9c4edf973/star_genome_list/'' CommandException: No URLs matched: gs://fc-08250b31-6e35-47ef-baee-31d9c4edf973/star_genome_list/chrNameLength.txt grep: /cromwell_root/stderr: No such file or directory
I've added GROUP_FireCloud-Support@firecloud.org to the workspace sbalch_er_loss_rna. The workflow is AB_star2pass_rsem_singlesample_copy_SB and the submission ID is 47220545-cd8e-4dc1-9991-bcdc6495afe2.
All of the files are in the workspace bucket and I can access all of them so any help on understanding why the workflow can't find them would be awesome.
Thanks in advance for your help!