I work with scRNA data and frequently work in both python and R, depending on the packages I want to use. Unfortunately, igraph is the bane of my existence, even though it was supposedly updated to avoid the conflict between python and R. If I start an environment in python with Scanpy and later move to R with MAST and other related packages, I won't able to move back into python and use Scanpy. I have to delete my environment and redownload Scanpy to get the package working. Does anyone know, can I use a conda environment or something similar to keep my R and python packages separate and avoid the igraph conflict? Or is there another way to get around this issue?
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