Workflow submissions requiring drs to gs resolution stalled and tasks not running.

Post author
Chet Birger

We are running a workflow where the input BAMs reside on GDC-managed google buckets and the files are identified by URIs containing the files' UUIDs; e.g. "drs://dataguids.org/8466e786-5981-421d-ab9a-a6553c5c8285".  Terra resolves these to google storage URLs, which are passed into the workflow.  This is currently not working.  While the workflows are in the "Running" state they appear to be stuck, with none of the constituent tasks running.  This is new behavior....just last night these workflow submissions were running fine.

Comments

1 comment

  • Comment author
    Samantha (she/her)

    Hi Chet Birger,

     

    Thank you for reporting this issue. Can you share the workspace where you are seeing this issue with GROUP_FireCloud-Support@firecloud.org by clicking the Share button in your workspace? The Share option is in the three-dots menu at the top-right.

    1. Add GROUP_FireCloud-Support@firecloud.org to the User email field and press enter on your keyboard.
    2. Click Save.

     

    Let us know the workspace name, as well as the relevant submission and workflow IDs. We’ll be happy to take a closer look as soon as we can.

     

    Best,

    Samantha

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