Need Help?

Search our documentation and community forum

Terra is a cloud-native platform for biomedical researchers to access data, run analysis tools, and collaborate.
Terra powers important scientific projects like FireCloud, AnVIL, and BioData Catalyst. Learn more.

PAPI Error code 2

Comments

7 comments

  • Avatar
    Jason Cerrato

    Hi Lleonard,

    I'll be happy to take a look at this. Can you share the workspace where the issue occured with GROUP_FireCloud-Support@firecloud.org by clicking the Share button in your workspace (see the icon with the three dots at the top-right)?

    1. Add GROUP_FireCloud-Support@firecloud.org to the User email field and press Enter on your keyboard
    2. Click Save

    Let me know the workspace name, as well as the relevant submission ID.

    Would you also be able to provide me (jcerrato@broadinstitute.org) access to the docker so I can replicate the issue?

    Kind regards,

    Jason

    0
    Comment actions Permalink
  • Avatar
    lleonard188

    I shared the workspace. The submission ID is 4d35a2ad-d726-4192-a40e-f11f28ed7291 and the workspace name is ChipSeq Pipeline. I added you as a Browser to my Google Cloud project, I'm not sure if that will provide the access you need or not.

    0
    Comment actions Permalink
  • Avatar
    Jason Cerrato

    Hi Lleonard,

    Would you also be able to provide jcerrato@broadinstitute.org access to gcr.io/docker-215501/chipseq-pipeline so I can confirm it's a valid Docker? Can you confirm you are a member of the group that has access to this Docker? Have you been able to use this Docker in the past or is this your first time trying to use it?

    Kind regards,
    Jason

    0
    Comment actions Permalink
  • Avatar
    lleonard188

    I'm not sure why you can't access it but I've changed your role to Editor so hopefully that works. Yes I'm a member of the group. I think I've used it it before.

    0
    Comment actions Permalink
  • Avatar
    Jason Cerrato

    Hi Lleonard,

    I did a test with that Docker and ran into the same issue. I believe the issue is that because this is a private Docker image, you will need to make sure your Proxy Group address, found in your Terra profile, has permission to the Docker image. This is required for non-public Dockers because one of your Terra pet service accounts will be running the workflow on your behalf and attempting to pull the Docker image, rather than your email address.

    Can you give your Proxy Group the same permissions you gave me and try running again?

    Kind regards,

    Jason

    0
    Comment actions Permalink
  • Avatar
    lleonard188

    The error is gone now, thanks.

    0
    Comment actions Permalink
  • Avatar
    Jason Cerrato

    Hi Lleonard,

    Glad to hear! If we can be of any further assistance, please let us know.

    Kind regards,

    Jason

    0
    Comment actions Permalink

Please sign in to leave a comment.

Powered by Zendesk