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VCF File Has Lines of Single Genotype Call in GT Field for A Diploid Organism

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3 comments

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    Jason Cerrato

    Hi Rose,

    It looks like this may be a GATK question rather than a Terra question. Would you be willing to reach out to GATK support for this issue by posting here: https://gatk.broadinstitute.org/hc/en-us/community/topics

    Many thanks,

    Jason

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    Rose Huang

    Thank you Jason. I have decided to rerun the whole thing. If the issue keeps showing up I will post it on the GATK forum. Sorry for the confusion!

    Rose

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    Jason Cerrato

    Hi Rose,

    No problem! Hope all goes well.

    Jason

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