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Error during Dropseq_workflow Run on Cumulus

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    Jason Cerrato

    Hi Hanbing,

    Thank you for reporting the error, we'll be happy to take a closer look. Can you share the workspace where you are seeing this issue with GROUP_FireCloud-Support@firecloud.org by clicking the Share button in either the icon of your workspace in the workspace list or inside the workspace dashboard (see the icon with the three dots). Let us know the workspace name, as well as the relevant submission and workflow ID(s).

    Kind regards,

    Jason

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    Hanbing Song

    Hi Jason, 

    Thanks for following up on this. I talked to Dr. Josh Gould who made the dropseq_workflow and he helped me figure out the problem. The input sample list should be comma-delimited. But in the past I've been using tab-delimited file, which caused the parsing error. Now I changed the input sample list to comma-delimited and the error is gone. 

     

    Hanbing

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    Jason Cerrato

    Hi Hanbing,

    Sounds good—glad to to hear you were able to get it working! If we can be of any further assistance, please let us know.

    Kind regards,

    Jason

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