I am trying to run the Suggested Workflow: haplotypecaller-gvcf-gatk4
I have created an interval list using the Picard ScatterIntervalsByNs tool.
However, when I try to run the Workflow I get an error:
Caused by: java.lang.IllegalArgumentException: Could not build the path "RRCD01000051.1 1 24628 + ACGTmer". It may refer to a filesystem not supported by this instance of Cromwell. Supported filesystems are: Google Cloud Storage, DRS. Failures:
Google Cloud Storage: Path "RRCD01000051.1 1 24628 + ACGTmer" does not have a gcs scheme (IllegalArgumentException)
This error is thrown for each of the intervals in my interval list.
I'm guessing that the workflow is coded wrong, but I can't tell. Any suggestions?
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