General workflow documentation
- Overview: How the workflow system works
- What to expect when you submit a workflow
- Getting started with GATK workflows in the cloud FAQs
- Finding the workflow (method) you need (and its JSON) in the Methods Repository
- How to import a workflow and its parameter file from Dockstore into Terra
- Job History overview (monitoring workflows)
- How to retrieve the time and cost of a completed workflow
- Scaling your workflow submissions
- Create, edit, and share a new workflow
- Getting workflows up and running faster with a JSON file
- Using the Command Line interface to upload a workflow
- How to test workflows locally
- Manage data/automate workflows with the FISS API
- Deeper dive: WDLs, workflows, tasks
- How to access archived workflow details