Getting Started with WDL

WDL syntax and structure basics.

Sections

• Plumbing Options
  • Linear chaining
  • Branch & merge
  • Multi-input / Multi-output
  • Scatter-gather parallelism
  • Task aliasing
• Script Components
  • workflow
  • call
  • task
  • command
  • output

Articles

• Base structure
• Add variables
• Add plumbing
• Validate syntax
• Specify inputs
• Execute!
• Toolkit: All the tools you need to write and run WDLs