Frequently Asked Questions (WDLs)
Questions that people ask often about workflows and Workflow Description Language
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Which workflow execution engines support WDL? What is Cromwell?
This documentation is in the process of being updated. In the meantime, you may find that some GATK commands are out of date, or that the WDL information is incomplete. If you encounter any issues you can't solve, please let us know. Please see t...
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What do I need to set up to write and execute WDL workflows?
This documentation is in the process of being updated. In the meantime, you may find that some GATK commands are out of date, or that the WDL information is incomplete. If you encounter any issues you can't solve, please let us know. Below is a l...
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How can I run different versions of Java on the same computer?
This documentation is in the process of being updated. In the meantime, you may find that some GATK commands are out of date, or that the WDL information is incomplete. If you encounter any issues you can't solve, please let us know. We sometimes...
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Can runtime parameter values be generated dynamically?
This documentation is in the process of being updated. In the meantime, you may find that some GATK commands are out of date, or that the WDL information is incomplete. If you encounter any issues you can't solve, please let us know. Say you have...
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