Getting Started WDL Tutorials

Step-by-step tutorials for writing pipelines in WDL.

• WDL puzzles: Hands-on practice for scripting and configuring Terra workflows
• (howto) Install software for WDL workshops
• [1] (howto) Write your first WDL script running GATK HaplotypeCaller
• [2] (howto) Write a simple multi-step workflow
• [3] (howto) Run a sample variant discovery mini-pipeline
• [4] (howto) Use scatter-gather to joint call genotypes