WDL Documentation
Documentation for the Workflow Description Language. For a gentle introduction on how to write WDL workflows, check out Getting Started with WDL.
-
Getting Started with WDL
The Workflow Description Language (WDL, usually pronounced as 'widdle') is a community-driven, human-readable language for data processing workflows. Whether you want to use WDL in Terra or develop your own WDL workflows, we have the resources to ...
See more -
Base Structure
This documentation is in the process of being updated. In the meantime, you may find that some GATK commands are out of date, or that the WDL information is incomplete. If you encounter any issues you can't solve, please let us know. There are 5 ...
See more -
Add Variables
This documentation is in the process of being updated. In the meantime, you may find that some GATK commands are out of date, or that the WDL information is incomplete. If you encounter any issues you can't solve, please let us know. In this cont...
See more -
Add Plumbing
This documentation is in the process of being updated. In the meantime, you may find that some GATK commands are out of date, or that the WDL information is incomplete. If you encounter any issues you can't solve, please let us know. By plumbing,...
See more -
Validate Syntax
This documentation is in the process of being updated. In the meantime, you may find that some GATK commands are out of date, or that the WDL information is incomplete. If you encounter any issues you can't solve, please let us know. Nobody likes...
See more -
Specify Inputs
This documentation is in the process of being updated. In the meantime, you may find that some GATK commands are out of date, or that the WDL information is incomplete. If you encounter any issues you can't solve, please let us know. The simple...
See more -
Execute!
This documentation is in the process of being updated. In the meantime, you may find that some GATK commands are out of date, or that the WDL information is incomplete. If you encounter any issues you can't solve, please let us know. At the momen...
See more -
Toolkit: All the tools you need to write and run WDLs
This documentation is in the process of being updated. In the meantime, you may find that some GATK commands are out of date, or that the WDL information is incomplete. If you encounter any issues you can't solve, please let us know. AUTHORING ...
See more