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Workflows
WDL Resources
Archived WDL Resources
Archived WDL Resources
WDL resources that have been moved or archived
Getting Started with WDL
Base structure
Add variables
Add plumbing
Validate syntax
Specify inputs
Getting Started WDL Tutorials
(howto) Install software for WDL workshops
[1] (howto) Write your first WDL script running GATK HaplotypeCaller
[2] (howto) Write a simple multi-step workflow
[3] (howto) Run a sample variant discovery mini-pipeline
[4] (howto) Use scatter-gather to joint call genotypes
Frequently Asked Questions (WDLs)
Which workflow execution engines support WDL? What is Cromwell?
What do I need to set up to write and execute WDL workflows?
How can I run different versions of Java on the same computer?
Can runtime parameter values be generated dynamically?