Anika Das

1. Community
2. General Discussion
3. Running concurrent notebooks from a single Workspace under separate tmux sessions

Hi Konstantin,    We had our engineers take a look, and they gave it a try themselves. They tried running multiple basic notebooks in the terminal concurrently via tmux/nohup and it seemed to work....

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• June 23, 2021 15:58
• 1 vote

1. Community
2. General Discussion
3. Joint-genotyping on terra

Hi Rezo, Please find the answers to your questions below:1) Does the runtime environment create separate VM instances for each shard during importGVCF stage? Yes, Google spins up a VM for each task...

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• June 22, 2021 14:27
• 0 votes

1. Community
2. General Discussion
3. Joint-genotyping on terra

Hi Rezo,  Thanks for writing in with these questions! We will look into them and get back to you as soon as possible! Kind Regards,  Anika

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• June 22, 2021 13:50
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1. Community
2. General Discussion
3. Running concurrent notebooks from a single Workspace under separate tmux sessions

Hi Konstantin,  Based on this article, https://www.maketecheasier.com/nohup-and-uses/ , it sounds like nohup is a command that is used to keep something running in the terminal even if the user log...

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• June 21, 2021 18:11
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1. Community
2. General Discussion
3. Running concurrent notebooks from a single Workspace under separate tmux sessions

Hi Konstantin,  I'm not certain about the functionality of nohup in Terra, but I will look into it and let you know what I find! Kind Regards, Anika

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• June 21, 2021 15:38
• 1 vote

1. Community
2. Active Feature Requests
3. GA4GH Passport Support on Terra

Hello Danny,​  Thank you for writing in! I've sent this request to our development team for consideration, and I'll be happy to follow up with you if this feature gets built. Kind regards, Anika​

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• June 21, 2021 15:02
• 0 votes

1. Community
2. General Discussion
3. Running concurrent notebooks from a single Workspace under separate tmux sessions

Hi Konstantin, Thank you for writing in about this issue! It seems like the runs are failing because tmux isn't yet fully supported in Terra cloud environments. I'd be happy to file tmux support as...

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• June 17, 2021 21:01
• 1 vote

1. Community
2. General Discussion
3. Struct Definition and sample_set entity

Hi Kathleen,  You mentioned in your question that write_lines() is expecting Array[String] as input but you are providing Array[File]. What you can do is add in a line at the top of your command th...

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• June 09, 2021 15:30
• 0 votes

1. Community
2. General Discussion
3. Struct Definition and sample_set entity

Hi Kathleen,  Can you try quoting the keys in the json objects? Instead of: { vcf: this.vcf, vcf_ind: this.vcf_ind, sample: this.sample_id, participant: this.participant} try: { "vcf": this.vc...

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• June 07, 2021 18:00
• 0 votes

1. Community
2. Completed Feature Requests
3. Add the "AnVIL" package in the cloud environments by default

Hello Eugenio,​  Thank you for writing in! I've sent this request to our development team for consideration, and I'll be happy to follow up with you if this feature gets built. Kind regards, Anika​ 

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• June 01, 2021 20:45
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