Elise Valkanas (she/her)

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3. Unable to determine reason for Mutect2 failure in Terra from log file

Hi Jason,  I was able to get this issue resolved through the GATK forum. I updated the version of GATK (the one featured on the workspace had a bug in this tool) and some Funcotator files and it wo...

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• November 23, 2021 15:58
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1. Community
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3. Unable to determine reason for Mutect2 failure in Terra from log file

HI Jason,  Thanks for the advice. I re-ran this workflow twice with increased set_task_mem (20GB and 40GB) like you recommended, although this increases memory to other tasks too, not just Funcotat...

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• November 01, 2021 21:16
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1. Community
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3. Unable to determine reason for Mutect2 failure in Terra from log file

Hi Jason,  Thanks! I tried running this job again with increasing the Funcotate disk and ram variables you pointed me to above, but my job failed and looks to have used the same disk and ram resour...

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• October 28, 2021 18:27
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1. Community
2. General Discussion
3. Unable to determine reason for Mutect2 failure in Terra from log file

Hello! I just shared my workspace and here is the other info: https://app.terra.bio/#workspaces/prenatal-wgs/Somatic-SNVs-Indels-GATK4_20211019  Workflow ID: 4842f753-56b2-4140-860c-f0b8b609fdd9  S...

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• October 26, 2021 20:52
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