Andrew Davidson
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Recent activity by Andrew Davidson
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thanks Andy
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Thanks Jason
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Hi Samantha I think the new version of Cromwell works better. I bumped memory up to 64 GB and was able to run to completion Andy
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Hi Samantha I made a small change to my WDL. in the task I switch to '<<< >>>' syntax. It still fails how ever it seems to work better. I now get "Task salmon_quant.salmon_paired_reads:NA:1 fail...
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Thanks, Samantha Strange it worked differently during the test on my local machine. This is great news. Salmon writes its log files in the subdirectory. Maybe We will find something that helps debu...
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Hi Samantha I suspect that the reason for the error code 137 was because memory was exhausted and terra ignored my 'runtime' configuration. My ref index must be loaded into memory. It is 19 GB. Not...
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Hi Samantha I think you should have access now. The sharing UI is not obvious. before I just cut and paste the email address and clicked on the "save" button. I missed the detail about needing to h...
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Hi SamanthaI create a sharable workspace that does not have user identifiable information. I still have the same errorPlease see the comments on the Dashboardhttps://app.terra.bio/#workspaces/test-...
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Let me see if I can create reproduce the bug in a new workspace using samples I can share Andy
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I tried running with 32 gb of memory and 80gb of disk. I still get the same error
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