Giulio Genovese
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Recent activity by Giulio Genovese
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Maybe time to implement in Cromwell/Terra a system to cache docker images when running large arrays of tasks? (similarly to what is done when running Cromwell with HPC shared filesystem environment...
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Thank you! 🙏
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I did notice that the Workflow Dashboard reports all error messages, which is good. For my own personal use I also know how to download the metadata through the API. I am mostly worried about users...
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I wanted to mention that I have encountered the same issue last Saturday night / Sunday morning while running a workflow on GCS with my own instance of Cromwell. I have reported the problem here.
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The appropriate way to group/aggregate elements of an array is to use the collect_by_key() function although this is only available in WDL development version. As an example, the following WDL: ver...
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I think the problem is simply that in the code: python /usr/local/bin/sample_sheet \ "${inputFile}" You left a space after the "\" character, so it is not interpreted as a line continuation.
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Super! That's awesome and very timing. Thank you Jason! :-)
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I looked at the code and the error is generated from the ScatterKey.scala file: if(scatterSize > maxScatterWidth) { workflowExecutionActor ! JobFailedNonRetryableResponse(this, new Exception(s"Wor...
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A job I submitted yesterday on Terra failed with the following message: Workflow has scatter width 38717, which is more than the max scatter width 35000 allowed per scatter! The scatter was not ca...
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Just wanted to bring some closure. Rewriting the WDL to minimize the amount of metadata passed to tasks by passing files rather then Array[String] objects whenever possible did the trick and I was ...
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