Roger Dettloff

Member since May 31, 2020 16:04

Total activity 10

Last activity June 07, 2020 15:24

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Votes on activity by Roger Dettloff

Hi Sushma ChaluvadiI found this article helpful, but it left me wondering how to upload a more complex WDL script that imports relative dependencies. The Cromwell server is said to allow us to sub...
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- June 04, 2020 00:32
- 4 votes
I had one more issue with this gatk4-exome-analysis-pipeline:I also needed to increase the runtime memory for the QC.CollectHsMetrics step. This was easy to do, since that task takes a "memory_mul...
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- June 07, 2020 15:24
- 0 votes
BeriI've noticed that the latest version of this workflow in the git repo now has relative imports for several wdl files. For example: `import "./tasks/UnmappedBamToAlignedBam.wdl" as ToBam`.How ca...
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- Edited June 07, 2020 00:41
- 0 votes
BeriI was able to resolve this issue by increasing the runtime memory for the SortSam call in BamProcessing.wdl from 5000 to 10000, like this:runtime {docker: "us.gcr.io/broad-gotc-prod/genomes-in-...
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- June 07, 2020 00:13
- 0 votes
While running the https://github.com/gatk-workflows/gatk4-exome-analysis-pipeline workflow. I keep getting this error message: "Job Failed with Error Code 10 for a machine where Preemptible is set ...
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- May 31, 2020 16:21
- 0 votes