Roger Dettloff
Activity overview
Latest activity by Roger Dettloff
-
Roger Dettloff commented,
I had one more issue with this gatk4-exome-analysis-pipeline:I also needed to increase the runtime memory for the QC.CollectHsMetrics step. This was easy to do, since that task takes a "memory_mul...
- View comment
- 0 votes
-
Roger Dettloff commented,
BeriI've noticed that the latest version of this workflow in the git repo now has relative imports for several wdl files. For example: `import "./tasks/UnmappedBamToAlignedBam.wdl" as ToBam`.How ca...
- View comment
- Edited
- 0 votes
-
Roger Dettloff commented,
BeriI was able to resolve this issue by increasing the runtime memory for the SortSam call in BamProcessing.wdl from 5000 to 10000, like this:runtime {docker: "us.gcr.io/broad-gotc-prod/genomes-in-...
- View comment
- 0 votes
-
Roger Dettloff created a post,
gatk4-exome-analysis-pipeline BamProcessing.SortSam fails with Error Code 10
BeriI'm trying to run your ExomeGermlineSingleSample workflow (Source: github.com/gatk-workflows/gatk4-exome-analysis-pipeline/ExomeGermlineSingleSample:update2.0v)I was able to successfully use th...
- Roger Dettloff
- 2 followers
- 4 comments
- 0 votes
- Answered
-
Roger Dettloff commented,
Hi Sushma ChaluvadiI found this article helpful, but it left me wondering how to upload a more complex WDL script that imports relative dependencies. The Cromwell server is said to allow us to sub...
- View comment
- 3 votes
-
Roger Dettloff commented,
While running the https://github.com/gatk-workflows/gatk4-exome-analysis-pipeline workflow. I keep getting this error message: "Job Failed with Error Code 10 for a machine where Preemptible is set ...
- View comment
- 0 votes