dsilencio

Member since January 28, 2021 19:37

Total activity 4

Last activity June 30, 2021 14:43

Following 0 users

Followed by 1 user

Votes 0

Subscriptions 1

Activity overview

Latest activity by dsilencio

dsilencio commented, June 30, 2021 14:43
I did switch the SplitIntervals scatter_mode to 'INTERVAL_SUBDIVISION' which resulted in thousands of shards. I initially tried to get an estimate of cost for the joint genotyping step by running G...
- View comment
- June 30, 2021 14:43
- 0 votes
dsilencio commented, June 28, 2021 14:00
Hi Irakli, I was able to run this workflow on ~4300 WGS cram files using the workflow as described. I elected to use GenotypeGVCFs (contrary to the recommendations above) in order to keep the pipel...
- View comment
- June 28, 2021 14:00
- 0 votes
dsilencio created a post, January 28, 2021 19:37
Large WGS cohort genotyping with 'GATK Best Practices Germline SNPs and INDELS'

Hello Beri , I am looking to perform joint genotyping on 4300 WGS samples with the with the 1-4-JointGenotyping-hg38 Workflow from the GATK Best Practices Germline SNPs and INDELs Workspace. I have...
- dsilencio
- January 28, 2021 19:37
- 3 followers
- 7 comments
- 0 votes
- Answered