Kenneth Westerman

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3. Strategy for cleaning up a workspace bucket

Thanks for all of these suggestions! Ultimately, I was able to make progress by filtering the Job History page in a semi-targeted way and going one-by-one to the associated GCP UI pages to delete n...

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• July 17, 2023 15:31
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3. Strategy for cleaning up a workspace bucket

Workspace link: https://terra.biodatacatalyst.nhlbi.nih.gov/#workspaces/kw-bdc-strides-credits/TOPMed-gene-diet

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• June 29, 2023 22:29
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3. Strategy for cleaning up a workspace bucket

I do think the strategy of deleting intermediate files could get the job done (I'm fine getting rid of any workflow products other than logs and files that are actually tracked as results in the Da...

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• June 27, 2023 14:41
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3. Strategy for cleaning up a workspace bucket

Thanks, Josh! So far, I've been using gcloud from a terminal on my laptop.

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• June 21, 2023 21:47
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Strategy for cleaning up a workspace bucket

I have a workspace associated with a now-published manuscript, so I'm not producing new results but would like to keep all relevant workflow runs and data results around. I want to get rid of a bun...

• Kenneth Westerman
• June 20, 2023 23:41
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• 9 comments
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3. New error (Validation errors: Extra inputs) running somatic calling pipeline: problem with Cromwell 48?

Just made a test workspace and workflow that reproduces the issue. I have a simple test workflow that used to take two File inputs ("A" & "B") and worked fine. I then updated the workflow such that...

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• September 04, 2020 15:58
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3. New error (Validation errors: Extra inputs) running somatic calling pipeline: problem with Cromwell 48?

Yes, correct. Seems to continue recurring each time there is a workflow input that is no longer part of the updated Dockstore workflow.

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• Edited August 04, 2020 15:51
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3. New error (Validation errors: Extra inputs) running somatic calling pipeline: problem with Cromwell 48?

Just checking in here to report that this issue seems to still persist. I updated a workflow today that is linked through Dockstore (that involved changing the names of input parameters), and upon ...

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• August 03, 2020 16:19
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3. New error (Validation errors: Extra inputs) running somatic calling pipeline: problem with Cromwell 48?

I haven't seen the error recur yet but will continue to monitor. Thank you!

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• March 30, 2020 19:26
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