User

Liz Kiernan

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Total activity 130
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Followed by 1 user
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Articles

Recent activity by Liz Kiernan

  • When and how to use a set table for a workflow

    Set tables are a useful way to organize data when 1) you want to group specific input data for (repeat) analysis or 2) if your analysis requires multiple input files to produce a single output. Lea...

    • Updated
    • 1 follower
    • 0 comments
    • -1 votes

  • Understanding and using Gen3 data in Terra

    Gen3 is an open-source, cloud-based platform that helps researchers store and search data hosted by consortia like NHLBI BioData Catalyst. Learn how to access Gen3 data in Terra and describe the st...

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    • 1 follower
    • 0 comments
    • 1 vote

  • How to modify and edit data tables

    Learn how to edit and manage data tables in a Terra workspace: edit individual cells, add or delete table rows or columns, sort by or hide metadata (columns), etc.  Edit in Terra: Step-by-step inst...

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    • 1 follower
    • 0 comments
    • 1 vote

  • How to access controlled data on external servers (i.e., Gen3)

    Learn to use controlled-access data from Gen3 on Terra by linking your Terra user ID to your authorization account (such as a dbGaP account). Linking your authorization lets Terra automatically det...

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    • 6 followers
    • 6 comments
    • -2 votes

  • How to add workspace-level input data (workspace data table)

    Learn how to generate a dedicated table to hold workspace-level resources such as reference files or Docker containers.  Why use a Workspace Data table? The Workspace Data table can hold variables ...

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    • 2 followers
    • 1 comment
    • 0 votes

  • How to access previous versions of Jupyter Docker images using the Google Container Registry

    Learn how to set up your Jupyter Cloud Environment virtual machine (VM) software with a preconfigured Terra Docker image. Although these images are updated routinely to the latest software, you can...

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    • 2 followers
    • 0 comments
    • 0 votes

  • Exploring Human Cell Atlas data on Terra

    This step-by-step tutorial uses the Intro-to-HCA-data-on-Terra workspace to import, access, and analyze Human Cell Atlas (HCA) data with community-supported single-cell tools like Bioconductor, Cum...

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    • 3 followers
    • 0 comments
    • 0 votes

  • Adding pair tables for tumor-normal analysis

    Learn how to link entity tables in Terra to analyze paired tumor and normal samples. Overview: Pair tables for tumor-normal samples Although Terra has two main types of data tables (entity and set)...

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    • 1 follower
    • 0 comments
    • 0 votes

  • Copying notebook output to a Google bucket

    Data generated in a Jupyter Notebook is inaccessible from outside your virtual laptop in the cloud (integrated development environment - IDE - in the cloud), even for collaborators working in the s...

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    • 5 followers
    • 11 comments
    • 2 votes

  • Februrary 24, 2020

    The following release notes correspond to February 22, 2020-February 24, 2020. This release includes back-end updates to Google Integrations and User Interface to improve upcoming features. Workflo...

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    • 1 follower
    • 0 comments
    • 0 votes