User

Liz Kiernan

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Articles

Recent activity by Liz Kiernan

  • Cloud Billing Office Hours [October 2022]

    Announcing Cloud Billing Office Hours You've used your workshop free credits and now you want to set up more permanent billing. We can help! You can find answers to your cloud billing questions by ...

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  • DRAGEN-GATK Webinar [Oct. 21, 2022]

    This October 21, join us for an interactive online workshop on Whole-Genome Analysis with DRAGEN-GATK! In this webinar, you will get the opportunity to learn about DRAGEN-GATK— what it is, why exis...

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    • 1 follower
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  • How to modify and edit data tables

    Learn how to edit and manage data tables in a Terra workspace: edit individual cells, add or delete table rows or columns, sort by or hide metadata (columns), etc.  Edit in Terra: Step-by-step inst...

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  • When and how to use a set table for a workflow

    Set tables are a useful way to organize data when you want to group files for (repeat) analysis or if your analysis requires multiple input files to produce a single output. Learn when to use a set...

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    • 1 follower
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  • How to import a workflow and its parameter file from Dockstore into Terra

    Dockstore is a GA4GH-compliant, open-source platform for sharing Docker-based tools, such as Terra-compatible workflows written in the Workflow Description Language (WDL). Read on for step-by-step ...

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    • 1 follower
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  • How to access previous versions of Jupyter Docker images using the Google Container Registry

    You can set up your interactive analysis Jupyter Cloud Environment virtual machine (VM) software with a preconfigured Terra Docker image. Although these images are updated routinely to the latest s...

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    • 2 followers
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  • Copying notebook output to a Google bucket

    Data generated in a Jupyter notebook is inaccessible from outside your virtual Cloud Environment (including by collaborators working in the same workspace!). To transfer data generated within a not...

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    • 5 followers
    • 11 comments
    • 2 votes
  • How to add workspace-level data (workspace data table)

    Learn how to generate a dedicated Workspace Data table to hold workspace-level resources.  Why use a Workspace Data table? The Workspace Data table can hold variables and resources - like the genom...

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    • 2 followers
    • 1 comment
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  • Understanding and using Gen3 data in Terra

    Gen3 is an open-source, cloud-based platform that allows researchers to store and search data hosted by consortia like NHLBI BioData Catalyst or AnVIL. This article gives instructions on how to acc...

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  • Terra architecture and where your files live in it

    Learn how cloud storage and compute resources are integrated in the Terra platform, and how to store and work with files and analysis tools across the different resources from within your workspace...

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    • 2 followers
    • 0 comments
    • 1 vote