GE

Member since October 16, 2019 19:12

Total activity 12

Last activity February 07, 2020 03:43

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Activity overview

Latest activity by GE

GE commented, February 07, 2020 03:43
Hello, I'm having the same error. For a pipeline that previously worked perfectly fine. So it must be a bug in Terra. Please fix it. Validation errors: Extra inputs: WholeGenomeGermlineSingleSamp...
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- February 07, 2020 03:43
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GE commented, October 17, 2019 17:20
My strong suspicion is that after the Docker hub outage, docker changed something in its codebase that is affecting how Terra communicates with docker hub. This in turn is causing a systematic bug ...
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- October 17, 2019 17:20
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GE commented, October 17, 2019 17:18
Most importantly -- the KeyNotFound error is causing specific tasks to fail 100% of the time - not sporadically as you wrote previously. At the same time, other cromwell tasks that use the same exa...
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- October 17, 2019 17:18
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GE commented, October 17, 2019 17:17
@Adam Nichols - Per my above comments, I strongly suspect this is *not* an issue with Docker Hub, for a few reasons: 1) Docker Hub is no longer reporting an outage and there are no other users onli...
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- October 17, 2019 17:17
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GE commented, October 17, 2019 14:34
Any update on this issue that has completely disabled Terra?
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- October 17, 2019 14:34
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GE commented, October 17, 2019 00:36
Furthermore, the fact that the workflows are actually still running despite this error and the job marked as Failed (and this is the case in 5 of the workflows that had this error - they are all st...
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- October 17, 2019 00:36
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GE commented, October 17, 2019 00:31
Hi all, I also discovered something important. My jobs that failed with this error are not just showing as if they are running -- they are ACTUALLY still running. I can clearly see this because the...
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- October 17, 2019 00:31
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GE commented, October 17, 2019 00:27
I'm concerned this won't get resolved. Because the status.docker.com page indicates that as far as they are concerned, everything is back to normal. Are you all speaking to docker to make sure they...
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- Edited October 17, 2019 00:28
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GE commented, October 16, 2019 20:44
Thanks, but I don't think this is a good solution. Almost every GATK workflow, including featured workspaces, use docker hub dockers. You all would need to completely rewrite most of your Terra and...
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- October 16, 2019 20:44
- 1 vote
GE commented, October 16, 2019 20:36
As you can see, based on the fact that there are tasks that fail and tasks that work that both use the same docker, I suspect the issue might be something on the side of cromwell. Please help... we...
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- October 16, 2019 20:36
- 3 votes