User

Sabrina Camp

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Total activity 92
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Posts

Votes on activity by Sabrina Camp

  • Workflows failing with GCSBatchFlow errors

    Hi, I have 3 different workflows in two workspaces that have been giving me GCSBatchFlow related errors since 10 pm last night. I have ran these workflows successfully before with the same configur...

    • 3 followers
    • 3 comments
    • 3 votes
  • TCGA MC3 BAMs failing workflows

    Hi, I have been working with HG19 TCGA data held in various TCGA_{cancercode}_ControlledAccess_V1-0_DATA workspaces. There are 209 MC3 bams that fail every workflow I run on them with an error code...

    • 4 followers
    • 4 comments
    • 2 votes
  • GPU utilization in a Terra notebook

    Hi!  I was working through [this](https://support.terra.bio/hc/en-us/articles/4403006001947-Getting-started-with-GPUs-in-a-Cloud-Environment) documentation on using GPUs in a Terra notebook.  This ...

    • 3 followers
    • 2 comments
    • 1 vote
  • Terra notebook cloud compute cost

    Hi, To our understanding, Terra's jupyter notebooks leverage the google cloud infrastructure (e.g. virtual machine instances, boot disk, and persistent disk). The "Running cloud compute cost" is th...

    • 2 followers
    • 2 comments
    • 1 vote
  • Display preempted jobs differently than errors that cause job failure

    Hi! When I am running workflows that involve scatter jobs on preemptible machines, I have noticed it is difficult to find the error that caused my workflow to fail. Each time a scattered job is pre...

    • 2 followers
    • 2 comments
    • 1 vote
    • Completed
  • Issue copying Jupyter notebook to new workspace

    Hi! I am trying to copy a jupyter notebook to a different workspace that I have owner access to. However, when I search for that workspace after selecting "copy to new workspace" it does not appear.

    • 2 followers
    • 6 comments
    • 1 vote
    • Answered
  • Error linking NIH account

    Hi, This morning, I tried to re-link my NIH account. I received this error message.   Is there any workaround? Best, Sabrina Camp

    • 2 followers
    • 2 comments
    • 0 votes
  • Trouble logging in and using terra notebooks

    Hi,  When I try to log in to Terra w/ a google account, I get the following error   However, I am able to log in when using an incognito window. Unfortunately, once I navigate to a notebook analys...

    • 2 followers
    • 2 comments
    • 0 votes
  • Terra cloud environment stuck in deleting - unable to create a new cloud environment

    Hi, I tried to delete a cloud environment and then create a new one, and I received the following error:   When I looked at my cloud environments page, the cloud environments for this workspace se...

    • 3 followers
    • 6 comments
    • 0 votes
  • Error modifying cloud environment - Terra notebook not able to be used

    Hi, I was trying to start a python 3 kernel jupyter notebook with the "Python" application configuration (us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.4), and the kernel would never star...

    • Edited
    • 2 followers
    • 7 comments
    • 0 votes