User

Sabrina Camp

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Total activity 89
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Posts

Recent activity by Sabrina Camp

  • Terra notebook cloud compute cost

    Hi, To our understanding, Terra's jupyter notebooks leverage the google cloud infrastructure (e.g. virtual machine instances, boot disk, and persistent disk). The "Running cloud compute cost" is th...

    • 2 followers
    • 2 comments
    • 1 vote

  • Error linking NIH account

    Hi, This morning, I tried to re-link my NIH account. I received this error message.   Is there any workaround? Best, Sabrina Camp

    • 2 followers
    • 2 comments
    • 0 votes

  • Trouble logging in and using terra notebooks

    Hi,  When I try to log in to Terra w/ a google account, I get the following error   However, I am able to log in when using an incognito window. Unfortunately, once I navigate to a notebook analys...

    • 2 followers
    • 2 comments
    • 0 votes

  • Terra cloud environment stuck in deleting - unable to create a new cloud environment

    Hi, I tried to delete a cloud environment and then create a new one, and I received the following error:   When I looked at my cloud environments page, the cloud environments for this workspace se...

    • 3 followers
    • 6 comments
    • 0 votes

  • Error modifying cloud environment - Terra notebook not able to be used

    Hi, I was trying to start a python 3 kernel jupyter notebook with the "Python" application configuration (us.gcr.io/broad-dsp-gcr-public/terra-jupyter-python:1.0.4), and the kernel would never star...

    • Edited
    • 2 followers
    • 7 comments
    • 0 votes

  • Terra notebooks fail to autosave

    Hi, I am receiving an error while using Terra notebooks that the notebook failed to autosave. When I try to manually save and checkpoint using the File dropdown menu, it also does not save. This is...

    • Edited
    • 1 follower
    • 2 comments
    • 0 votes

  • Unable to create cloud environment for jupyter notebook

    Hi! This morning I have been unable to create a new cloud environment to use for a Terra jupyter notebook. The environment shows it is being created for 10 minutes, and then it times out. I have tr...

    • 18 followers
    • 7 comments
    • -1 votes

  • Increasing disk size on attached persistent disk does not increase space on /home/jupyter/notebooks

    Hi, I am using a jupyter notebook on Terra, and I am trying to increase the amount of disk space available from 100 GB to 200 GB on /home/jupyter/notebooks where I am storing various files.  I am s...

    • 2 followers
    • 3 comments
    • 0 votes

  • Many different errors today

    Hi! On different workflows, and in different workspaces, I have been getting an assortment of errors on jobs. These are the errors where the only solution (that I know of) is to rerun the workflow,...

    • 2 followers
    • 3 comments
    • 0 votes

  • hg19 and hg38 TCGA workspaces

    Hi! I was wondering if there is any documentation on the curation of the hg19 and hg38 controlled-access TCGA workspaces. I have found some samples in the GDC legacy archive that aren't listed in t...

    • 6 followers
    • 17 comments
    • 0 votes