Sabrina Camp

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2. Completed Feature Requests
3. Importing TSVs that contain arrays

I am running into the same issue as well. I would love to see this feature! 

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• September 23, 2020 17:22
• 2 votes

1. Community
2. General Discussion
3. Error modifying cloud environment - Terra notebook not able to be used

Update: I was able to change the environment by entering a new path to a base image in the Custom Environment container image section. However, my issue of the kernel not starting still remains. He...

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• Edited April 25, 2022 20:45
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2. General Discussion
3. Terra notebooks fail to autosave

Upon further investigation, this issue seems to be directly related to the size of the notebook. The notebook that was failing to autosave was 135 Mb. When I deleted half of the cells in the notebo...

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• January 18, 2022 16:20
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2. General Discussion
3. Terra notebooks fail to autosave

When I keep trying to click the save button, the screen goes to this and when I reload my work is lost up to the last successful checkpoint.

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• January 18, 2022 15:50
• 0 votes

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2. General Discussion
3. Unable to create cloud environment for jupyter notebook

Hi Samantha, This issue did resolve itself last week. However, I am coming across this issue again this week where the environment creation times out. This happens using any custom environment.  Is...

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• January 18, 2022 14:44
• 0 votes

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2. General Discussion
3. Unable to create cloud environment for jupyter notebook

Hi Samantha, I'm using an older base image intentionally. If I always use the most recent image, the packages installed would be newer/different versions which hurts the reproducibility in my resea...

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• January 06, 2022 21:18
• 0 votes

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2. General Discussion
3. Unable to create cloud environment for jupyter notebook

scamp@broadinstitute.org terra-10407992 saturn-30f54dde-6911-4c80-8c62-c94008e53c75 Issue started around 10 AM

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• January 04, 2022 17:06
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2. General Discussion
3. Increasing disk size on attached persistent disk does not increase space on /home/jupyter/notebooks

Update: The next time I started the cloud environment (today, after increasing the disk 3 days ago), the additional disk was present on /home/jupyter/notebooks. I'm not sure why there was a delay, ...

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• October 25, 2021 14:47
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2. General Discussion
3. Many different errors today

Hi, One of the workspaces is "vanallen-firecloud-nih/VanAllen_Master_Prostate_copy_germline_analysis". An example submission ID is 5226e3cf-fc15-4228-9f80-40c929db4512 with a few of the failed work...

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• November 09, 2020 16:09
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2. General Discussion
3. hg19 and hg38 TCGA workspaces

Also on another note, I am trying to use bam files from the hg38 cohort and see this note on the dashboard of the workspace "hg38 TCGA and TARGET workspaces reference files by their GDC UUIDs. In o...

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• October 07, 2020 15:20
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