Sabrina Camp

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3. Terra notebooks fail to autosave

When I keep trying to click the save button, the screen goes to this and when I reload my work is lost up to the last successful checkpoint.

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• January 18, 2022 15:50
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3. Unable to create cloud environment for jupyter notebook

Hi Samantha, I'm using an older base image intentionally. If I always use the most recent image, the packages installed would be newer/different versions which hurts the reproducibility in my resea...

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• January 06, 2022 21:18
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3. Unable to create cloud environment for jupyter notebook

scamp@broadinstitute.org terra-10407992 saturn-30f54dde-6911-4c80-8c62-c94008e53c75 Issue started around 10 AM

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• January 04, 2022 17:06
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3. Increasing disk size on attached persistent disk does not increase space on /home/jupyter/notebooks

Update: The next time I started the cloud environment (today, after increasing the disk 3 days ago), the additional disk was present on /home/jupyter/notebooks. I'm not sure why there was a delay, ...

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• October 25, 2021 14:47
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3. Many different errors today

Hi, One of the workspaces is "vanallen-firecloud-nih/VanAllen_Master_Prostate_copy_germline_analysis". An example submission ID is 5226e3cf-fc15-4228-9f80-40c929db4512 with a few of the failed work...

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• November 09, 2020 16:09
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3. hg19 and hg38 TCGA workspaces

Also on another note, I am trying to use bam files from the hg38 cohort and see this note on the dashboard of the workspace "hg38 TCGA and TARGET workspaces reference files by their GDC UUIDs. In o...

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• October 07, 2020 15:20
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3. error updating sample set table

Hi Samantha, I am trying to upload columns to the sample set table. I thought that the way to do this was to have the sample_set_ids in the entity:sample_set_id column and then add other columns I ...

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• July 30, 2020 15:02
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3. error updating sample set table

Hi!  The workspace name is all_germline_control_cohorts. There is no submission/ workflow ID because I am just uploading a sample set table. This is a screenshot of what it looks like.    Best, Sab...

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• July 29, 2020 15:57
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3. Workflows failing with GCSBatchFlow errors

Hi Tiffany, Thank you for the update! All of the workflows are now working as usual.  All the best, Sabrina

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• July 10, 2020 19:37
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3. TCGA MC3 BAMs failing workflows

Hi Jason, Thank you for looking at this issue. These are distinct IDs from the other list I sent. However, when I looked at this list sent in this thread I did notice some with a missing bam path e...

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• May 22, 2020 15:42
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