User

Sabrina Camp

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Total activity 83
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Votes 13
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Posts

Recent activity by Sabrina Camp

  • Updated hg19 TCGA BAM links causing error in multiple workflows

    Hi, I have been attempting to work with the tcga hg19 aligned BAMs that have updated paths and have been receiving an error in two different workflows. One workflow uses samtools to get the statist...

    • 3 followers
    • 5 comments
    • 0 votes

  • Updated hg19 TCGA BAM links not loading in IGV

    Hi, I have not been able to load the updated TCGA hg19 bam URLs into IGV. The pop up window says "bucket is requestor pays bucket but no user project provided". However, I have provided a user proj...

    • 3 followers
    • 4 comments
    • 0 votes

  • Jupyter Notebook Edit Mode Issue

    In the last week, when using a jupyter notebook in edit mode I have been getting this pop up notification (attached picture). To my knowledge, in edit mode my changes are supposed to be automatical...

    • 2 followers
    • 5 comments
    • 0 votes

  • Display preempted jobs differently than errors that cause job failure

    Hi! When I am running workflows that involve scatter jobs on preemptible machines, I have noticed it is difficult to find the error that caused my workflow to fail. Each time a scattered job is pre...

    • 2 followers
    • 2 comments
    • 1 vote
    • Completed

  • Issue copying Jupyter notebook to new workspace

    Hi! I am trying to copy a jupyter notebook to a different workspace that I have owner access to. However, when I search for that workspace after selecting "copy to new workspace" it does not appear.

    • 2 followers
    • 6 comments
    • 1 vote
    • Answered