Sabrina Camp

1. Community
2. General Discussion
3. Many different errors today

Hi, One of the workspaces is "vanallen-firecloud-nih/VanAllen_Master_Prostate_copy_germline_analysis". An example submission ID is 5226e3cf-fc15-4228-9f80-40c929db4512 with a few of the failed work...

• View comment
• November 09, 2020 16:09
• 0 votes

1. Community
2. General Discussion
3. hg19 and hg38 TCGA workspaces

Also on another note, I am trying to use bam files from the hg38 cohort and see this note on the dashboard of the workspace "hg38 TCGA and TARGET workspaces reference files by their GDC UUIDs. In o...

• View comment
• October 07, 2020 15:20
• 0 votes

1. Community
2. Completed Feature Requests
3. Importing TSVs that contain arrays

I am running into the same issue as well. I would love to see this feature! 

• View comment
• September 23, 2020 17:22
• 2 votes

1. Community
2. General Discussion
3. error updating sample set table

Hi Samantha, I am trying to upload columns to the sample set table. I thought that the way to do this was to have the sample_set_ids in the entity:sample_set_id column and then add other columns I ...

• View comment
• July 30, 2020 15:02
• 0 votes

1. Community
2. General Discussion
3. error updating sample set table

Hi!  The workspace name is all_germline_control_cohorts. There is no submission/ workflow ID because I am just uploading a sample set table. This is a screenshot of what it looks like.    Best, Sab...

• View comment
• July 29, 2020 15:57
• 0 votes

1. Community
2. General Discussion
3. Workflows failing with GCSBatchFlow errors

Hi Tiffany, Thank you for the update! All of the workflows are now working as usual.  All the best, Sabrina

• View comment
• July 10, 2020 19:37
• 0 votes

1. Community
2. General Discussion
3. TCGA MC3 BAMs failing workflows

Hi Jason, Thank you for looking at this issue. These are distinct IDs from the other list I sent. However, when I looked at this list sent in this thread I did notice some with a missing bam path e...

• View comment
• May 22, 2020 15:42
• 0 votes

1. Community
2. General Discussion
3. Jobs say they're running but they do not appear to be

I have a few jobs that are still showing they are running in the job manager but when you look at the task level, all of the tasks show completion. The data model also is not being populated with t...

• View comment
• March 10, 2020 12:06
• 0 votes

1. Community
2. General Discussion
3. Updated hg19 TCGA BAM links causing error in multiple workflows

Hi Jason, I just shared the workspace with you. workspace name: VanAllen_Master_Prostate_copy_germline_analysis  submission id: d00acede-931e-4ab0-9b82-01fea435caed workflow id: there is none  B...

• View comment
• January 06, 2020 21:50
• 0 votes

1. Community
2. General Discussion
3. Updated hg19 TCGA BAM links causing error in multiple workflows

Hi Jason,   I went back and relinked my eRA Commons account (I do not use the DCP or DCF framework services). When I ran the workflow again, I received the same error. Anything else I should try?  ...

• View comment
• January 06, 2020 19:18
• 0 votes