lck

Member since June 19, 2019 14:17

Total activity 31

Last activity February 15, 2021 14:31

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Recent activity by lck

Error editing a wdl from a featured workspace

I'm not sure if this is the correct spot for this question, as it lives somewhere in the Terra/GATK/Broad intersection, so please feel free to direct me elsewhere if needed. I'm getting an error fo...
- April 29, 2020 17:50
- 2 followers
- 22 comments
- 0 votes
New error (Validation errors: Extra inputs) running somatic calling pipeline: problem with Cromwell 48?

I'm running the GATK Somatic Variant calling pipeline on batches of samples, and something has broken between 1/20/2020 and today. My last batch ran fine, but today when I try to run the next batch...
- January 23, 2020 14:50
- 6 followers
- 24 comments
- 0 votes
Format for uploading an intervals file?

I'm trying to upload a targets/intervals file for my exome sequence data, but can't figure out what's required. I have a bed file (which is listed as an option in the FireCloud documentation), but ...
- June 19, 2019 14:17
- 3 followers
- 5 comments
- 0 votes