Yossi Farjoun

Member since June 11, 2019 20:36

Total activity 23

Last activity March 15, 2022 15:29

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Activity overview

Latest activity by Yossi Farjoun

Yossi Farjoun commented, March 15, 2022 15:29
I was just about to request this and saw that it was already requested.....It would be Immensely helpful!!!
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- March 15, 2022 15:29
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Yossi Farjoun commented, January 31, 2022 19:39
Note that this only works for monolythic wdls and not for github-backed scripts brought in via dockstore....
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- January 31, 2022 19:39
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Yossi Farjoun commented, January 31, 2022 18:50
thanks for this guide! I was unable to find the various options that could be present in the variable MEM_UNIT. For example, if the units are GB, would the value be: - "g" - "GB" -"Gb" -1000000000...
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- Edited January 31, 2022 18:51
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Yossi Farjoun commented, January 12, 2022 15:19
I'd like to second this. I have some workflows that run on "files" (not entities) and they are used to prepare resources for subsequent workflows. The inputs for these workflows can already include...
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- January 12, 2022 15:19
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Yossi Farjoun commented, December 13, 2021 04:18
Is there a mechanism for requesting more reference disks? I would love to have the various GTEX star indexes for example...
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- Edited December 13, 2021 04:19
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Yossi Farjoun created a post, June 18, 2019 23:04
Asked for preemtible, but getting non-preemtible

As part of my 5000 submissions of BAM->gVCF workflow I run HaplotypeCaller with preemptible=3. looking at the operations (via firecloud) I see that I'm actually getting non-preemptible machines, ...
- Yossi Farjoun
- June 18, 2019 23:04
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Yossi Farjoun commented, June 13, 2019 20:18
UPDATE: I'm running using up my 3000 IPs. looks like jobs are starting to trickle out. Given that I can only see in hindsight when jobs are being throttled, I can't really tell you what's going on ...
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- June 13, 2019 20:18
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Yossi Farjoun commented, June 13, 2019 17:32
OK. so I'm giving up on the noAddress=true for now. but FYI, it would be helpful for users like me if it were possible to do private IPs.
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- June 13, 2019 17:32
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Yossi Farjoun commented, June 13, 2019 15:37
In order to avoid asking for so many IP addresses, I moved the docker image to gcr and put "noAddress=true". after attempting to run the workflows nothing seems to be happening....the scattered tas...
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- June 13, 2019 15:37
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Yossi Farjoun commented, June 12, 2019 14:35
hmmm. reading that page, I am unclear about the definition of "project": In Terra I can only find the word "project" next to "billing" as in "billing project". my billing project (for this works...
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- June 12, 2019 14:35
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Asked for preemtible, but getting non-preemtible