User

Cora Ricker

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Total activity 10
Last activity
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Activity overview

Latest activity by Cora Ricker

  • Cora Ricker commented,
    1. Community
    2. General Discussion
    3. Broken pipe error

    Hi Jason, Thank you for the recommendation - that helped me figure out the problem! I still get the broken pipe error, but I'm able to run the tasks successfully.  My original assumption was wrong,...

  • Cora Ricker commented,
    1. Community
    2. General Discussion
    3. Broken pipe error

    Hi Jason,  The script will create a dummy file that's empty when something isn't working, so the task will still succeed with the dummy file as it's output. The next task mutPostProcessing fails be...

  • Cora Ricker commented,
    1. Community
    2. General Discussion
    3. Broken pipe error

    Thank you, Jason!   Workspace: https://portal.firecloud.org/#workspaces/vanallen-firecloud-nih/VanAllen-Schoenfeld_16-284_SCC_copy Submission ID: 23d8e22d-50d6-4fac-aebb-bec4f7530739 Workflow ID: e...

  • Cora Ricker created a post,

    Broken pipe error

    Hello, I am trying to run the two lines of code below in a python script & am getting the following error on Terra: command = 'export NHOME=/netMHCpan-4.1; export NETMHCpan=/netMHCpan-4.1/Linux_x8...

    • Cora Ricker
    • 2 followers
    • 7 comments
    • 0 votes
  • Cora Ricker commented,
    1. Community
    2. General Discussion
    3. submission queued for an hour.

    That answered my question. Thank you for your help! 

  • Cora Ricker commented,
    1. Community
    2. General Discussion
    3. submission queued for an hour.

    Though some of my jobs are running, they have been running very slowly and some tasks have been queued for hours. Is there still a queue backlog?