Jake Conway

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Hey Jason, Not sure if only the DRS paths are failing. The majority of TCGA bams have been moved to DRS paths. All my account services and frameworks are active, and were active at time of running ...

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• May 19, 2020 14:43
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Hey Jason,  I gave workspace access to that support group. It's just TCGA data. The workflow run on May 10, 2020, 6:52 PM includes successful and failed runs using jakec/FACETS. Thanks, Jake

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• May 18, 2020 20:06
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Jason Cerrato I ran a different workflow vanallenlab/facets instead of my version of of the same method jakec/FACETS, and the vanallenlab version of the workflow ran successfully. However, the vana...

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• Edited May 17, 2020 05:53
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Jason Cerrato here's the submission ID: 8e84a6d4-9dd0-4c14-a4ec-e17d29ed1e62 and workflow ID: 1c4b5fee-864d-43b7-8af0-ab35586ef936 Thanks, Jake

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• May 15, 2020 19:35
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Hey Jason, Now I'm getting: The job was stopped before the command finished. PAPI error code 2. Execution failed: generic::unknown: action 23: preparing standard output: creating logs root: mkdir /...

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• May 15, 2020 18:34
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Hey Jason Cerrato, Running now. Will report back within the hour. Thanks, Jake

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• May 15, 2020 17:33
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Hey Jason, I couldn't find any examples of using with 4GB. I might have deleted the workspaces where I used 4GB. I do have examples using intermediate memory (12GB and 20GB).  Submission ID: 96eee7...

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• May 14, 2020 16:41
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Just to make sure the error is still ongoing, here is a submission and workflow ID from just a few minutes ago. Submission ID: 9a484149-393b-4204-b9a7-51ff73672b06 Workflow ID: 08cce805-c41c-40de-a...

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• May 14, 2020 15:53
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Hey Jason,  Here is an a submission ID under vanallen-melanoma-wgs at 30GB: 5d2b82fa-fb86-4998-bbdf-56796f45b4d2 An example workflow with error: 5f001429-008d-4734-bab2-4ad4568ff28a Submission ID u...

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• May 14, 2020 15:31
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