Stephen Fleming

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3. monitoring_script and monitoring_image options in Terra

runtime { ...    monitor_image: quay.io/broadinstitute/cromwell-monitor} I believe you can do the above in a WDL, but then I am not clear on how to get the results.  Denis Loginov any tips on ho...

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• September 23, 2020 21:36
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3. monitoring_script and monitoring_image options in Terra

I don't know the best answer, but just wanted to throw a couple links up here for the next time I search for this: https://github.com/broadinstitute/dsp-scripts/blob/master/cromwell/methods/cromwel...

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• September 23, 2020 21:30
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3. Possible to clone a notebook VM?

Hi Jason, Yeah, I was a bit vague there.  I was mainly referring to the fact that we have several workflows internally that all require particular versions of particular tools.  As some of the tool...

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• March 09, 2020 20:47
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3. Failed to check notebook status: "Autosave Failed!"

Hi Jason, One more note that may be helpful to others who read this... I have noticed very recently that some of the time when I get this error, my laptop has jumped onto a different wifi network (...

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• February 21, 2020 20:59
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3. Failed to check notebook status: "Autosave Failed!"

Hi Jason, Just as a note, sometimes when I get that "Autosave Failed!" message, if I refresh the page, I get this:     Don't know if that's any kind of a clue... I have not deleted and re-created ...

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• February 17, 2020 00:17
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3. Failed to check notebook status: "Autosave Failed!"

Hi Jason,   The terminal message is not really well correlated with the notebook error.  Often the notebook error occurs without the terminal error.  The notebook error is the real problem for me, ...

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• Edited January 22, 2020 19:24
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3. Failed to check notebook status: "Autosave Failed!"

Hi Jason,   Thanks!  It's bayer-pcl-single-cell/bayer_pcl_single_cell I have only ever used notebooks in Terra from within that particular workspace.  And yes, that's my email.   Thanks! Stephen  

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• January 22, 2020 16:01
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3. Failed to check notebook status: "Autosave Failed!"

Sometimes this state is accompanied by an issue with opening the Terminal.  Here's an example where it hangs forever with the message "Almost ready..."  

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• January 21, 2020 21:09
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3. Issue interpreting array inputs to workflow

Very interested in this as well, I have experienced the same issue with optional Array inputs.

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• August 09, 2019 21:17
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It's possible that this could be helpful for you: https://jupyter.readthedocs.io/en/latest/install-kernel.html#id3  

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• July 31, 2019 15:57
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