User

Stephen Fleming

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Recent activity by Stephen Fleming

  • Specify Array[File] output for a task in a WDL

    I had a question about how to specify a `task` output that is an array of files `Array[File]`.  Chris Llanwarne answered my question, and so I will post it here.   Short version: ------------------...

    • 3 followers
    • 1 comment
    • 0 votes

  • Long-running command in Terra Cloud Environment terminal

    I have a long-running command I'd like to run in the terminal on a Terra workspace Cloud Environment.  I'd like it to be able to crank away on a GPU for days, in some cases. There seems to be a tim...

    • 3 followers
    • 3 comments
    • 1 vote

  • Workflow auto-retry based on error message

    Could we get the ability to automatically retry a failed workflow for certain specific failure messages in Terra?  For example, if I see the string "Execution failed: generic::unknown: installing d...

    • 2 followers
    • 2 comments
    • 1 vote

  • WDL versions supported by Terra

    Which versions of WDL are we able to use in workflows in Terra? I've used "draft-2" and "1.0" in the past.  But there is a feature in WDL 1.1 that I want to use.  Can we use WDL version 1.1 in Terra?

    • 3 followers
    • 5 comments
    • 1 vote