Stephen Fleming

Workflow auto-retry based on error message

Could we get the ability to automatically retry a failed workflow for certain specific failure messages in Terra?  For example, if I see the string "Execution failed: generic::unknown: installing d...

• Stephen Fleming
• May 26, 2023 19:41
• 2 followers
• 1 comment
• 1 vote

1. Community
2. Active Feature Requests
3. Requests for default Python/R packages and libraries

Software: R Package: `sudo apt-get install libopenblas-base` (Not really an R package, but this would be software installed in the R base image for Terra.) Function: automatic multi-core operations...

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• May 26, 2023 19:21
• 0 votes

1. Community
2. General Discussion
3. WDL versions supported by Terra

You might be interested in something like this https://github.com/openwdl/wdl/blob/main/versions/1.0/SPEC.md#computing-inputs You are allowed to do input { Int a = 1}Int b = 1 + acommand { .....

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• Edited March 06, 2023 15:00
• 1 vote

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2. General Discussion
3. WDL versions supported by Terra

Posting this for others...As per Josh Evans from Terra Support: "Currently the version of Cromwell run by Terra supports workflows using WDL 1.0. However, there are plans to support 1.1 in the futu...

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• January 04, 2023 21:01
• 0 votes

WDL versions supported by Terra

Which versions of WDL are we able to use in workflows in Terra? I've used "draft-2" and "1.0" in the past.  But there is a feature in WDL 1.1 that I want to use.  Can we use WDL version 1.1 in Terra?

• Stephen Fleming
• January 04, 2023 18:05
• 3 followers
• 5 comments
• 0 votes

1. Community
2. General Discussion
3. Failed to check notebook status: "Autosave Failed!"

Hi Shoaib, I think, from a practical standpoint, we can consider this solved.  I have still seen that banner pop up... but if I just wait or hit the "save" button, the banner will always go away.  ...

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• December 16, 2022 16:31
• 0 votes

1. Community
2. General Discussion
3. Failed to check notebook status: "Autosave Failed!"

Hi Shoaib, That sounds reasonable. These days, the issue seems to resolve itself all the time.  It doesn't resolve itself and then stop forever... it keeps happening intermittently, several times p...

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• November 01, 2022 18:31
• 0 votes

1. Community
2. General Discussion
3. Failed to check notebook status: "Autosave Failed!"

I still see it, even today.  Sometimes it does resolve on its own, so it is less of a problem than it used to be. I wonder if it has something to do with authentication, or with very costly comput...

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• October 31, 2022 17:01
• 0 votes

1. Community
2. Active Feature Requests
3. Support folders (in addition to files) in the Terra data table

Excellent, thanks Shoaib!

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• October 18, 2022 18:53
• 0 votes