
Stephen Fleming
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Latest activity by Stephen Fleming
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Stephen Fleming created a post,
Workflow auto-retry based on error message
Could we get the ability to automatically retry a failed workflow for certain specific failure messages in Terra? For example, if I see the string "Execution failed: generic::unknown: installing d...
- Stephen Fleming
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- 1 vote
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Stephen Fleming commented,
Software: R Package: `sudo apt-get install libopenblas-base` (Not really an R package, but this would be software installed in the R base image for Terra.) Function: automatic multi-core operations...
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Stephen Fleming commented,
You might be interested in something like this https://github.com/openwdl/wdl/blob/main/versions/1.0/SPEC.md#computing-inputs You are allowed to do input { Int a = 1}Int b = 1 + acommand { .....
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Stephen Fleming commented,
Posting this for others...As per Josh Evans from Terra Support: "Currently the version of Cromwell run by Terra supports workflows using WDL 1.0. However, there are plans to support 1.1 in the futu...
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Stephen Fleming created a post,
WDL versions supported by Terra
Which versions of WDL are we able to use in workflows in Terra? I've used "draft-2" and "1.0" in the past. But there is a feature in WDL 1.1 that I want to use. Can we use WDL version 1.1 in Terra?
- Stephen Fleming
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- 5 comments
- 0 votes
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Stephen Fleming commented,
Hi Shoaib, I think, from a practical standpoint, we can consider this solved. I have still seen that banner pop up... but if I just wait or hit the "save" button, the banner will always go away. ...
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Stephen Fleming commented,
Hi Shoaib, That sounds reasonable. These days, the issue seems to resolve itself all the time. It doesn't resolve itself and then stop forever... it keeps happening intermittently, several times p...
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Stephen Fleming commented,
I still see it, even today. Sometimes it does resolve on its own, so it is less of a problem than it used to be. I wonder if it has something to do with authentication, or with very costly comput...
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Stephen Fleming commented,
Excellent, thanks Shoaib!
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Stephen Fleming created a post,
Support folders (in addition to files) in the Terra data table
Currently, when I click on an entry in the Terra data table that points to a folder (by which I mean a google bucket path that is not a concrete file), I see something like this Technically the me...
- Stephen Fleming
- 2 followers
- 2 comments
- 1 vote