
Khalid Shakir
Activity overview
Latest activity by Khalid Shakir
-
Khalid Shakir commented,
Hi Josh, Thanks for checking in with the team. This issue is not specific to Python. I'm sorry if I confused folks by providing examples using two different languages. I originally used Python beca...
- View comment
- 0 votes
-
Khalid Shakir commented,
I'm still curious what the engineers are seeing when they try the Python code above. Since last month, I've updated the more exhaustive WDL that you looked at with another example. It still shows t...
- View comment
- 0 votes
-
Khalid Shakir commented,
The workspace name for ID d6d96bf4-7662-4cb2-85a6-fcbf92d692b5 above is https://app.terra.bio/#workspaces/bican_um1/pipeline_comparison_testing
- View comment
- 0 votes
-
Khalid Shakir created a post,
Memory retry mechanism not retrying
We ran this example task: task TestPythonMemRetry { command <<< echo "MEM_SIZE=$MEM_SIZE" >&2 echo "MEM_UNIT=$MEM_UNIT" >&2 python3 -c 'print(len([0] * (2**34)))' >>...
- Khalid Shakir
- 4 followers
- 6 comments
- 0 votes
-
Khalid Shakir commented,
> Is it related to the large number of (small) intermediate files? Yes. The large number of files to delete hit a pathological combo of issues inside Cromwell. This is already being looked at by th...
- View comment
- 0 votes
-
Khalid Shakir commented,
> It looks like someone did something > The files, of course, do not exist because they are intermediate files and were deleted. It looks as if the job restarted after some of the intermediate file...
- View comment
- 0 votes
-
Khalid Shakir commented,
Hi Yossi, Can we get a brief status update: Are your jobs running in general? If not, can you give us as much detail as possible to further debug the latest? Ultimately we'll be looking for Google ...
- View comment
- 0 votes
-
Khalid Shakir commented,
@ssb_cromwell This server shutdown is really difficult to debug without a concrete error message, so I'm mainly going off experiences I've seen elsewhere until an actual error message can be locate...
- View comment
- 0 votes