
Justin Rhoades
Posts
Recent activity by Justin Rhoades
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Trouble localizing some files
I'm running a workflow on 18 samples and one sample failed. It shows PAPI error code 9 and when I look at the logs it appears there was a problem localizing the BAM file with a 503 error: Resumable...
- 3 followers
- 8 comments
- 1 vote
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Unable to create new workspace
When I go to create a new workspace I now get a message that says 'Billing Project blood-biopsy has no Billing Account associated with it'. Is this related to the new project-per-workspace model? B...
- 2 followers
- 4 comments
- 0 votes
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Add Array[File] to Workspace Data table
Hello, Is it possible to add an Array[File] to the Workspace Data table? I've tried a few different things unsuccessfully and haven't been able to find any documentation that describes how to do th...
- 5 followers
- 13 comments
- 0 votes
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Find workspace info for a bucket
Is there a way to find out more information about a workspace from a bucket name? When migrating from Firehose to FireCloud/Terra we had data sequenced through Broad GP that I thought we paid to ha...
- 2 followers
- 1 comment
- 0 votes
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New pair set always created, even when selecting an existing pair set
I'm running a workflow on a pair set and I have an existing pair set that I'm choosing but when I click "run analysis" it creates a new pair set with those pairs and the job is shown as running on ...
- 2 followers
- 4 comments
- 0 votes
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Workflow error, key not found
I'm trying to rerun a pair set through the Mutect2-GATK4 workflow I've run several times before and am getting a workflow error that states "key not found: DockerInfoRequest(DockerImageIdentifierWi...
- 14 followers
- 43 comments
- 5 votes
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Preemptible job retrying more than the number of preemptible retries
I'm seeing that a task I'm running is retrying many more times than I would expect. I believe the task should have "preemptible: 1" and "maxRetries: 1" but from the job manager I see that it's cur...
- 2 followers
- 1 comment
- 0 votes
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Preemptible task not rerunning after being preempted
I have a task that I'm allowing 1 preemptible attempt and is scattered into 100 shards. I see several of the shards get preempted and retry on a regular machine but over a few attempts to run this...
- 3 followers
- 16 comments
- 0 votes
- Answered