User

Justin Rhoades

Member since
Total activity 46
Last activity
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Votes 2
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Posts

Recent activity by Justin Rhoades

  • Trouble localizing some files

    I'm running a workflow on 18 samples and one sample failed. It shows PAPI error code 9 and when I look at the logs it appears there was a problem localizing the BAM file with a 503 error: Resumable...

    • 3 followers
    • 8 comments
    • 1 vote

  • Unable to create new workspace

    When I go to create a new workspace I now get a message that says 'Billing Project blood-biopsy has no Billing Account associated with it'. Is this related to the new project-per-workspace model? B...

    • 2 followers
    • 4 comments
    • 0 votes

  • Add Array[File] to Workspace Data table

    Hello, Is it possible to add an Array[File] to the Workspace Data table? I've tried a few different things unsuccessfully and haven't been able to find any documentation that describes how to do th...

    • 5 followers
    • 13 comments
    • 0 votes

  • Find workspace info for a bucket

    Is there a way to find out more information about a workspace from a bucket name? When migrating from Firehose to FireCloud/Terra we had data sequenced through Broad GP that I thought we paid to ha...

    • 2 followers
    • 1 comment
    • 0 votes

  • New pair set always created, even when selecting an existing pair set

    I'm running a workflow on a pair set and I have an existing pair set that I'm choosing but when I click "run analysis" it creates a new pair set with those pairs and the job is shown as running on ...

    • 2 followers
    • 4 comments
    • 0 votes

  • Workflow error, key not found

    I'm trying to rerun a pair set through the Mutect2-GATK4 workflow I've run several times before and am getting a workflow error that states "key not found: DockerInfoRequest(DockerImageIdentifierWi...

    • 14 followers
    • 43 comments
    • 5 votes

  • Preemptible job retrying more than the number of preemptible retries

    I'm seeing that a task I'm running is retrying many more times than I would expect.  I believe the task should have "preemptible: 1" and "maxRetries: 1" but from the job manager I see that it's cur...

    • 2 followers
    • 1 comment
    • 0 votes

  • Preemptible task not rerunning after being preempted

    I have a task that I'm allowing 1 preemptible attempt and is scattered into 100 shards.  I see several of the shards get preempted and retry on a regular machine but over a few attempts to run this...

    • 3 followers
    • 16 comments
    • 0 votes
    • Answered