Justin Rhoades

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3. Trouble running parabricks fq2bam

Hi Samantha, Thanks for taking a look. Sounds like I need to discuss with Nvidia to figure out what's going on. -Justin

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• October 13, 2023 18:45
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3. Trouble running parabricks fq2bam

Hi Samantha, Just wanted to follow up and see if you were able to take a look at this. We're on a bit of a time crunch and I wanted to see if you could identify anything from your end. I've also po...

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• October 12, 2023 13:22
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1. Community
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3. Trouble running parabricks fq2bam

Thanks for taking a look, Samantha. I'm a little surprised because we are running the workflow exactly as provided by Nvidia but something appears to be wrong. Workspace: https://app.terra.bio/#wor...

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• October 04, 2023 20:57
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Trouble running parabricks fq2bam

Hello, I'm trying to run the fq2bam workflow from the Clara-Parabricks workspace provided on Terra. I'm getting an error:[Parabricks Options Error]: Could not find accessible GPUs. Please make sure...

• Justin Rhoades
• September 29, 2023 19:11
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• 5 comments
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3. Trouble localizing some files

Hi Samantha, Copying the file to a new location and retrying seems to have done the trick. I'm still confused about what went wrong initially since I believe a previous task read in that same file ...

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• December 10, 2021 20:19
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3. Trouble localizing some files

Thanks for the suggestion, Samantha. I tried doubling the memory to 16GB and also doubled disk space. It appears the task failed during localization again. I also found at least 3 samples with larg...

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• December 08, 2021 16:47
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3. Trouble localizing some files

Hi Samantha, I've shared https://app.terra.bio/#workspaces/blood-biopsy/DLBCL_MRD with the account you've provided. The submission ID is df3adbf7-6d4d-46a9-85e9-f3bdd12a4c67 and the workflow ID is ...

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• December 07, 2021 15:38
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Trouble localizing some files

I'm running a workflow on 18 samples and one sample failed. It shows PAPI error code 9 and when I look at the logs it appears there was a problem localizing the BAM file with a 503 error: Resumable...

• Justin Rhoades
• December 07, 2021 15:22
• 3 followers
• 8 comments
• 1 vote

1. Community
2. Completed Feature Requests
3. Importing TSVs that contain arrays

Hi, Curious if there are any updates on this feature request. Best, Justin

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• October 27, 2021 14:43
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