dplichta
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Recent activity by dplichta
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Hi Sushma, Thank you investigating this further, it also makes me less anxious that the TB diagnosis was a mistake :) I checked our task specification and it doesn't list any zone specification - c...
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Hi Sushma, 660GB that we requested is a many times multiply of 256MB. My understanding is that Cromwell / Firecloud should be able to adjust the requested machine settings to the closest and cheape...
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See here: https://portal.firecloud.org/#workspaces/rjxmicrobiome/rjxmicrobiome/monitor/1ee8c41a-b787-4881-84c6-ddfe15b4130e Thank you!
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Hmm, interesting. The tasks requests cpu: 32 and memory: "660GB". What can be causing the glitch? Damian
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Thanks Beri - will go for the high tech option, Damian
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HI Sushma, We are experiencing that issue continuously - is there any updade on what causes PAPI error code 10? See another workflow: rjxmicrobiome / biobakery.no.strains.HumanGenes.newDocker Da...
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rjxmicrobiome/Micropilot_v2_mOTUS_v2 May 22, 2019, 9:57 AM
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Hmm, still not working. I am operating Chrome on macOS. What's your setup? I will check with a colleague. Damian
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Hi Sushma, Thank you. Another piece of info for this run. Two shards were running for way too long (10h vs 1h) and upon inspection I saw they didn't move beyond container initiation step - so 4 sha...
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Hi Ruchi, Thank you! While you are at it, we are also observing failed attempts at listing Job Manager for the opposite case - single sample only (https://job-manager.dsde-prod.broadinstitute.org/j...
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