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dplichta

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Total activity 33
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Recent activity by dplichta

  • Custom Machine type does not exist

    We are getting the following error in the workflow with ID: 38793b59-f230-44f3-8b7c-29199d7c69b5. message: Task workflowBiobakery.strainphlanTree:7:3 failed. The job was stopped before the command ...

    • 2 followers
    • 8 comments
    • 0 votes

  • Neverending jobs

    Hi, We are observing some super long runs for a few tasks that normally take minutes / hour to complete. Could you investigate what's going on? Workspace rjxmicrobiome/rjxmicrobiome, workflow id e4...

    • 2 followers
    • 2 comments
    • 0 votes

  • Job history download for a workspace

    Hi, We want to be able to download job history for a workspace, in order to know who and when submitted particulars submissions. In the old Firecloud monitor it was possible to mark all entries and...

    • 3 followers
    • 3 comments
    • 0 votes
    • Answered

  • It's back: PAPI error code 10.

    Hi, Just noticed one of my jobs failing with PAPI error code 10. Wasn't the move towards v2 API supposed to fix this? Or is it a different problem? See in following workspace / method: rjxmicrobiom...

    • 5 followers
    • 7 comments
    • 2 votes

  • Bug - can't scroll in Share screen in Terra

    Hi, I noticed that I can't scroll when I open Share workspace panel in Terra (see screenshot). Scrolling defaults to the main page instead.

    • 2 followers
    • 3 comments
    • 0 votes

  • Failed run at container starting step

    Hi, I got a following type of error (not seen before) for a few shards in my pipeline in rjxmicrobiome workspace, method Micropilot_v2_mOTUS_v2. Any ideas? message: Task workflowMotus.motus:10:1 fa...

    • 2 followers
    • 5 comments
    • 0 votes

  • Storage info for each execution

    For each execution, apart from the processing cost, could you give info on how much storage overall is taken up by files created? Damian

    • 3 followers
    • 2 comments
    • 1 vote

  • Job Manager page chokes on large submissions

    With many samples (>3000) across multiple tasks, including scatter-gather, the job manager chokes and returns an error when I try to click on one of my running jobs. The same goes for finished jobs...

    • 4 followers
    • 10 comments
    • 2 votes

  • Docker: argument list too long

    I have 2 large scatter (>3000 samples) - gather statements in my pipeline. I hacked my way around the first one that was failing with a different error (Request payload size exceeds the limit: 5242...

    • 2 followers
    • 2 comments
    • 0 votes