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dplichta

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Activity overview

Latest activity by dplichta

  • dplichta commented,

    Hi Sushma, Thank you investigating this further, it also makes me less anxious that the TB diagnosis was a mistake :) I checked our task specification and it doesn't list any zone specification - c...

  • dplichta commented,

    Hi Sushma, 660GB that we requested is a many times multiply of 256MB. My understanding is that Cromwell / Firecloud should be able to adjust the requested machine settings to the closest and cheape...

  • dplichta commented,

    See here: https://portal.firecloud.org/#workspaces/rjxmicrobiome/rjxmicrobiome/monitor/1ee8c41a-b787-4881-84c6-ddfe15b4130e Thank you!

  • dplichta commented,

    Hmm, interesting. The tasks requests cpu: 32 and memory: "660GB". What can be causing the glitch? Damian

  • dplichta created a post,

    Custom Machine type does not exist

    We are getting the following error in the workflow with ID: 38793b59-f230-44f3-8b7c-29199d7c69b5. message: Task workflowBiobakery.strainphlanTree:7:3 failed. The job was stopped before the command ...

    • dplichta
    • 2 followers
    • 8 comments
    • 0 votes
  • dplichta created a post,

    Neverending jobs

    Hi, We are observing some super long runs for a few tasks that normally take minutes / hour to complete. Could you investigate what's going on? Workspace rjxmicrobiome/rjxmicrobiome, workflow id e4...

    • dplichta
    • 2 followers
    • 2 comments
    • 0 votes
  • dplichta commented,

    Thanks Beri - will go for the high tech option, Damian

  • dplichta created a post,

    Job history download for a workspace

    Hi, We want to be able to download job history for a workspace, in order to know who and when submitted particulars submissions. In the old Firecloud monitor it was possible to mark all entries and...

    • dplichta
    • 3 followers
    • 3 comments
    • 0 votes
    • Answered
  • dplichta commented,

    HI Sushma, We are experiencing that issue continuously - is there any updade on what causes PAPI error code 10? See another workflow: rjxmicrobiome / biobakery.no.strains.HumanGenes.newDocker   Da...

  • dplichta created a post,

    It's back: PAPI error code 10.

    Hi, Just noticed one of my jobs failing with PAPI error code 10. Wasn't the move towards v2 API supposed to fix this? Or is it a different problem? See in following workspace / method: rjxmicrobiom...

    • dplichta
    • 5 followers
    • 7 comments
    • 2 votes