Sehyun Oh
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Recent activity by Sehyun Oh
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I'm not sure whether I can share the workspace - it includes controlled dataset. ;( Actually, re-loading data table didn't cause the above error, but it failed with this error: Failed to evaluate '...
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Hi Sushma, I'm using a specific version of MuTect (v.1.7.1), because my tool for the downstream analysis is optimized for this version of MuTect. I tried MuTect2 from the 'Featured Workspace' to un...
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Hi Adelaide, Changing runtime environment makes everything work! Thanks! - Sehyun
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I checked the GitHub issue which was closed with a resolution for others, but this is still not working for me. $WORKSPACE_NAME and $WORKSPACE_BUCKET, both came with blanks - exactly same as above...
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Here it is - the new notebook from the new workspace. Doesn't seem that informative...
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Humm... I tried both restarting my cluster and starting a new cluster, but neither of them worked. I also made a new workspace and tried in a new cluster in that, but still returned with empty stri...
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Thanks Sushma! I think this is practically what I did too. :) So, now my understanding is that the only way to move data in and out of the notebook is using 'gsutil cp', right?
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Thanks Sashma! This walk through example is great. Also, the new link to the video is working. :)
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Ok. Something is working but I'm quite confused why it's even working. :P So, I updated the column names as you guys explained and kept only two columns because membership accepts only two columns....
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This seems pretty neat, but I can't make it work for now. This is the input .tsv file I tried: entity.sample_id participant sample_type tcga_sample_id WXS_bai_path WXS_bam_analysis_id WXS_bam_pathO...
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