Adam Nichols

1. Community
2. General Discussion
3. Issue interpreting array inputs to workflow

Based on a quick browse through the WDL spec, I think the coercion from File to Array[File] is not actually supported - rather, it happened to work by accident. Such an accident is never guaranteed...

• View comment
• July 22, 2019 20:07
• 0 votes

1. Community
2. General Discussion
3. Incorrect parsing of wdl

I can't review it, because I do not have access to that workspace.

• View comment
• July 22, 2019 19:53
• 0 votes

1. Community
2. General Discussion
3. Issue interpreting array inputs to workflow

Hi, In reference to However, since I tried launching the workflow yesterday afternoon going forward, this no longer works. can you please provide screenshots and/or exact error messages, please.

• View comment
• July 22, 2019 19:48
• 0 votes

1. Community
2. General Discussion
3. Incorrect parsing of wdl

Based on what I can see from here, an older implementation of draft-2 in FireCloud erroneously excluded non-optional task inputs for which a default was provided. Is your workflow impaired from run...

• View comment
• July 22, 2019 19:31
• 0 votes

1. Community
2. General Discussion
3. Incorrect parsing of wdl

The application automatically detects the WDL version based on the version header (no header for draft-2, version 1.0 for 1.0). You cannot use features from WDL 1.0 in a draft-2 WDL, like the input...

• View comment
• July 22, 2019 19:20
• 0 votes

1. Community
2. General Discussion
3. Incorrect parsing of wdl

Also, I would not expect the change in display of method configuration to have any functional impact, so you could simply proceed using draft-2 with the knowledge that the display has changed.

• View comment
• July 22, 2019 17:51
• 0 votes

1. Community
2. General Discussion
3. Incorrect parsing of wdl

You probably need a "version 1.0" declaration at the top. Upgrading from draft-2 to 1.0 is a non-trivial change and I do recommend familiarizing yourself with the spec before embarking. I will also...

• View comment
• July 22, 2019 17:49
• 0 votes

1. Community
2. General Discussion
3. Incorrect parsing of wdl

If you enter a value of "2" for default_cpu in the method configuration, it should get picked up and replace the default value of "1" when the WDL runs. I believe we may have previously failed to e...

• View comment
• July 22, 2019 16:22
• 0 votes

1. Community
2. General Discussion
3. GPU task error: "Could not load UVM kernel module. Is nvidia-modprobe installed?"

That's pretty cool, I did not know you could get operation description that easily!

• View comment
• April 30, 2019 16:31
• 0 votes

1. Community
2. General Discussion
3. GPU task error: "Could not load UVM kernel module. Is nvidia-modprobe installed?"

Hello, Thanks for the information you provided. Based on a round of very informal research, I would suggest checking out https://github.com/NVIDIA/nvidia-docker for support with this tool. A recomm...

• View comment
• April 30, 2019 16:19
• 0 votes