Adam Nichols
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Recent activity by Adam Nichols
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Thanks for the screenshot – while you're definitely using GCR for the GATK Docker, many workflows reference additional, hard-coded images that are not obvious from looking at the inputs. In the cas...
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Sporadic means, sometimes the same Docker image succeeds and sometimes it fails – based on whether the Docker Hub API returns quickly enough (which is random).
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See status.docker.com
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If you submit new workflows, do they all still get stuck – or is the problem more along the lines of existing workflows never finishing? Appreciate any info you can provide along these lines.
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I am pleased to report a schedule change in our favor, the fix has just been released.
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The fix is scheduled to release on Wednesday July 31 at 4 PM.
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You are welcome, glad to hear it. This is a really complicated domain where small things matter, and you are right to question the change.
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Tomorrow I'll test out an optional array with length >1 to determine whether the issue is specifically about inputs with length 1. That would be great to know, yes.
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I see it now, thank you! I ran the WDL through womtool on the command line and the results are the same as in the UI: womtool inputs CGA_WES_Characterization_Pipeline_v0.1_Dec2018.2.wdl includes th...
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Interesting, thanks for the update. I still believe you may be relying on undocumented functionality and recommend you implement the previously-suggested approach: Can you try putting `[ ]` around ...
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